abpoa

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  "desc": "SIMD-based C library for fast partial order alignment using adaptive band",
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  "enrichment_fetched_at": "2026-06-20T23:35:16+00:00",
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  "full_name": "abpoa",
  "github_default_branch": "main",
  "github_last_commit_at": "2026-06-20T17:18:38Z",
  "github_readme_excerpt": "# abPOA: adaptive banded Partial Order Alignment\n[![Latest Release](https://img.shields.io/github/release/yangao07/abPOA.svg?label=Release)](https://github.com/yangao07/abPOA/releases/latest)\n[![Github All Releases](https://img.shields.io/github/downloads/yangao07/abPOA/total.svg?label=Download)](https://github.com/yangao07/abPOA/releases)\n[![BioConda Install](https://img.shields.io/conda/dn/bioconda/abpoa.svg?style=flag\u0026label=BioConda%20install)](https://anaconda.org/bioconda/abpoa)\n[![PyPI](https://img.shields.io/pypi/dm/pyabpoa.svg?label=pip%20install)](https://pypi.python.org/pypi/pyabpoa)\n[![Published in Bioinformatics](https://img.shields.io/badge/Published%20in-Bioinformatics-blue.svg)](https://dx.doi.org/10.1093/bioinformatics/btaa963)\n[![GitHub Issues](https://img.shields.io/github/issues/yangao07/abPOA.svg?label=Issues)](https://github.com/yangao07/abPOA/issues)\n[![C/C++ CI](https://github.com/yangao07/abPOA/actions/workflows/linux-CI.yml/badge.svg)](https://github.com/yangao07/abPOA/actions/workflows/linux-CI.yml)\n[![C/C++ CI](https://github.com/yangao07/abPOA/actions/workflows/macos-CI.yml/badge.svg)](https://github.com/yangao07/abPOA/actions/workflows/macos-CI.yml)\n[![License](https://img.shields.io/badge/License-MIT-black.svg)](https://github.com/yangao07/abPOA/blob/main/LICENSE)\n\n## Updates (v1.5.6)\n* Allow easy incremental MSA\n* Add pyproject.toml for pyabpoa\n\n\n## Getting started\nDownload the [latest release](https://github.com/yangao07/abPOA/releases):\n```\nwget https://github.com/yangao07/abPOA/releases/download/v1.5.6/abPOA-v1.5.6.tar.gz\ntar -zxvf abPOA-v1.5.6.tar.gz \u0026\u0026 cd abPOA-v1.5.6\n```\nMake from source and run with test data:\n```\n# Linux or MacOS with armv8\nmake; ./bin/abpoa ./test_data/seq.fa \u003e cons.fa\n\n# MacOS with armv7\nmake armv7=1; ./bin/abpoa ./test_data/seq.fa \u003e cons.fa\n```\nOr, install via conda and run with test data:\n```\nconda install -c bioconda abpoa\nabpoa ./test_data/seq.fa \u003e cons.fa\n```\n## Table of Contents\n\n- [abPOA: adaptive band",
  "github_repo": "yangao07/abPOA",
  "github_stars": 139,
  "github_topics": [
    "alignment-graph",
    "banded-dp",
    "consensus-sequence",
    "consensus-sequences",
    "gfa-format",
    "long-reads",
    "multiple-sequence-alignment",
    "partial-order-alignment",
    "simd"
  ],
  "homepage": "https://github.com/yangao07/abPOA",
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  "license": "MIT",
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  "ruby_source_path": "Formula/a/abpoa.rb",
  "tap": "homebrew/core",
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  "version_head": "HEAD",
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