diamond

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  "github_readme_excerpt": "\u003cimg src=\"/../../../../bbuchfink/diamond-data/blob/main/diamond_coat_of_arms2.png\" height=280\u003e\n\nIntroduction\n============\n\nDIAMOND is a sequence aligner for protein and translated DNA searches,\ndesigned for high performance analysis of big sequence data. The key\nfeatures are:\n\n-   Pairwise alignment of proteins and translated DNA at 100x-10,000x\n    speed of BLAST.\n-   Clustering protein sequences with high sensitivity and scalability\n    including linear-time scaling and parallelization across many\n    compute nodes.\n-   Frameshift alignments for long read analysis.\n-   Low resource requirements and suitable for running on standard\n    desktops or laptops.\n-   Various output formats, including BLAST pairwise, tabular and XML,\n    as well as taxonomic classification.\n\n[![Build](https://github.com/bbuchfink/diamond/actions/workflows/cmake.yml/badge.svg)](https://github.com/bbuchfink/diamond/actions/workflows/cmake.yml)\n[![image](https://img.shields.io/cirrus/github/bbuchfink/diamond)](https://cirrus-ci.com/github/bbuchfink/diamond/master)\n[![image](https://img.shields.io/github/downloads/bbuchfink/diamond/total)](https://github.com/bbuchfink/diamond/releases)\n[![image](https://anaconda.org/bioconda/diamond/badges/version.svg)](https://anaconda.org/bioconda/diamond)\n[![Conda](https://img.shields.io/conda/dn/bioconda/diamond.svg)](https://anaconda.org/bioconda/diamond/files)\n[![image](https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2Fraw.githubusercontent.com%2Fbbuchfink%2Fdiamond-data%2Frefs%2Fheads%2Fmain%2Fcitations.json\u0026query=%24.citations\u0026style=flat\u0026label=Citations\u0026color=%23a020f0\n)](https://scholar.google.com/citations?user=kjPIF1cAAAAJ)\n[![image](https://img.shields.io/badge/Live%20chat-Discord-red)](https://discord.gg/ptJnz3GSCy)\n[![European Galaxy server](https://img.shields.io/badge/usegalaxy-.eu-brightgreen?logo=data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABgAAAASCAYAAABB7B6eAAAABGdBTUEAALGPC/xhBQAAACBjSFJNAAB6JgAAgIQAAPoAAACA6AAAdTAAAOpgAAA6mAAA",
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  "license": "GPL-3.0-or-later",
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