fastga

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  "desc": "Pairwise whole genome aligner",
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  "enrichment_fetched_at": "2026-06-20T23:37:31+00:00",
  "first_seen": "2026-06-20T23:34:18+00:00",
  "full_name": "fastga",
  "github_default_branch": "main",
  "github_last_commit_at": "2026-06-18T13:41:10Z",
  "github_readme_excerpt": "# FastGA: A Fast Genome Aligner\n\n[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](https://bioconda.github.io/recipes/fastga/README.html)\n[![Anaconda-Server Badge](https://anaconda.org/bioconda/fastga/badges/version.svg)](https://anaconda.org/bioconda/fastga)\n[![Anaconda-Server Badge](https://anaconda.org/bioconda/fastga/badges/downloads.svg)](https://anaconda.org/bioconda/fastga)\n\n  \n\u003cfont size =\"4\"\u003e**_Authors:  Gene Myers \u0026 Chenxi Zhou_**\u003cbr\u003e\n**_First:   May 10, 2023_**\u003cbr\u003e\n**_Last:  December 30, 2025_**\u003cbr\u003e\n\n- [FastGA](#FastGA) Compare two genomes or a genome against itself and output a .1aln, .paf, or .psl file of all alignments found.\n\n- [Sub-Process Routines](#subprocess)\n  - [FAtoGDB](#FAtoGDB): Convert a FASTA or ONEcode sequence file into a genome database (GDB)\n  - [GIXmake](#GIXmake): Build a genome index (GIX) for a given GDB\n  - [ALNtoPAF](#ALNtoPAF): Stream PAF formatted alignments for a given .1aln file\n  - [ALNtoPSL](#ALNtoPSL): Stream PSL formatted alignments for a given .1aln file\n\n- [Viewing Utilities](#viewing)\n  - [GDBshow](#GDBshow): Display select contigs or substrings thereof from a GDB\n  - [GDBstat](#GDBstat): Display various statistics and histograms of the scaffolds \u0026 contigs in a GDB\n  - [ANOshow](#ANOshow): Display annotation intervals of select contigs or subranges thereof from an ANO file\n  - [ANOstat](#ANOstat): Display various statistics and histograms of about the intervals in an ANO file\n  - [GIXshow](#GIXshow): Display range of a GIX\n  - [ALNshow](#ALNshow): Display selected alignments in a .1aln file in a variety of forms\n  - [ALNplot](#ALNplot): Display alignments in a .1aln or .paf file in a static collinear plot\n\n- [Additional Utilities](#addons)\n  - [GDBtoFA](#GDBtoFA): Converts a GDB back to the FASTA or ONEcode sequence file it was derived from\n  - [BEDtoANO](#BEDtoANO): Convert a BED formatted file to a .1ano-file\n  - [ANOtoBED](#ANOtoBED): Convert an ANO file to a ",
  "github_repo": "thegenemyers/FASTGA",
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  "homepage": "https://github.com/thegenemyers/FASTGA",
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  "last_seen": "2026-06-20T23:34:18+00:00",
  "license": "BSD-3-Clause AND MIT",
  "llm_generated_at": null,
  "llm_model": null,
  "name": "fastga",
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  "raw_hash": "db08352efaac0c84",
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  "ruby_source_path": "Formula/f/fastga.rb",
  "tap": "homebrew/core",
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  "version_head": "HEAD",
  "version_stable": "1.5",
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