gffread

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  "desc": "GFF/GTF format conversions, region filtering, FASTA sequence extraction",
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  "enrichment_fetched_at": "2026-06-20T23:37:59+00:00",
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  "full_name": "gffread",
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  "github_last_commit_at": "2026-04-10T18:38:51Z",
  "github_readme_excerpt": "## GffRead \n\nGFF/GTF utility providing format conversions, filtering, FASTA sequence \nextraction and more.\n\nMore details and usage examples can be found in the paper [DOI: 10.12688/f1000research.23297.1](http://dx.doi.org/10.12688/f1000research.23297.1) which can be also used to cite this software.\n\nThe official webpage with download packages for this utility can be found online here: \n http://ccb.jhu.edu/software/stringtie/gff.shtml#gffread\n\nUse `gffread -h` to see the command line usage options.\n\n## Installation\nBuilding this program from source requires the [GCLib](../../../gclib) source code \nlibrary. The `make` command should automatically fetch the latest gclib version from the repository if no `../gclib` directory is found.\n\n```\n  cd /some/build/dir\n  git clone https://github.com/gpertea/gffread\n  cd gffread\n  make release\n```\nThis should create the **gffread** binary in the current directory.\n\n\n",
  "github_repo": "gpertea/gffread",
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  "homepage": "https://github.com/gpertea/gffread",
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  "license": "MIT",
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